The study assessed the impact of motivation on employee job performance in the health sector mainly in Kapchorwa main hospital involving the hospital administrators, medical personnel and the patients. The study intended to sample 100 respondents; however, 60 of them participated in the interview making it a success. The study objectives were to find out the various tools/ways of motivation in the health sector, the impact of motivation on employee performance, the challenges facing motivation and the possible measures to such challenges. The research was to find out the cause of the trend that is taking place in the health sector concerning motivation and employee service delivery in the health sector despite all the efforts and attempts that have been put in place like central government like the high salaries given to the health personnel in addition to other guaranteed allowances like transport and housing allowances, there has been a sustained complaint among the health workers in regards to the way they are being motivated and also from the patients about the services they are being given.